| Safe Haskell | None |
|---|---|
| Language | Haskell2010 |
Bioshake.Tags
Description
This module introduces a set of common tags that are frequently used when defining phases.
- class DeDuped a
- class HasRG a
- class PairedEnd a
- class Sorted a
- class IsBam a
- class IsBcf a
- class IsBed a
- class IsCSV a
- class IsFastQ a
- class IsGff a
- class IsMPileup a
- class IsSam a
- class IsSeqzGZ a
- class IsTSV a
- class IsVCF a
- class IsTGZ a
- class IsCov a
- allTags :: [Name]
- allTransTagsPipe :: Name -> Q [Dec]
- allTransTags :: Name -> Q [Dec]
Documentation
Duplicated reads have been removed
Contains an RG line
Results from a paired end sequencing processed
Sorted (e.g., sorted sam/bam, or bed)
allTransTagsPipe :: Name -> Q [Dec] Source #
Template haskell to declare transitivity for all tags through a pipe ending
in a type. Examples include Out.
allTransTags :: Name -> Q [Dec] Source #
Same as allTransTagsPipe but for transitivity through a constructor.
Examples include All.