bioshake-0.1.0.0: Bioinformatics pipelines with shake

Safe Haskell	None
Language	Haskell2010

Bioshake.Cluster.Torque

Documentation

type ModuleName = String Source #

type Queue = String Source #

data TOption Source #

Constructors

Mem Int
CPUs Int
Walltime Int
Queue String
Module ModuleName
TStdout FilePath

Instances

Eq TOption Source #
Methods (==) :: TOption -> TOption -> Bool # (/=) :: TOption -> TOption -> Bool #
Show TOption Source #
Methods showsPrec :: Int -> TOption -> ShowS # show :: TOption -> String # showList :: [TOption] -> ShowS #
Args TOption Source #
Methods args :: TOption -> [Either TOption String] Source #

newtype Config Source #

Constructors

Config [TOption]

Instances

Args Config Source #
Methods args :: Config -> [Either TOption String] Source #

getCPUs :: Config -> Int Source #

class TArgs a where Source #

Minimal complete definition

Methods

cmdArgs :: [Either TOption String] -> a Source #

Instances

TArgs (IO ()) Source #
Methods cmdArgs :: [Either TOption String] -> IO () Source #
TArgs (Action ()) Source #
Methods cmdArgs :: [Either TOption String] -> Action () Source #
(Args a, TArgs r) => TArgs (a -> r) Source #
Methods cmdArgs :: [Either TOption String] -> a -> r Source #

class Args a where Source #

Minimal complete definition

Methods

args :: a -> [Either TOption String] Source #

Instances

Args String Source #
Methods args :: String -> [Either TOption String] Source #
Args Config Source #
Methods args :: Config -> [Either TOption String] Source #
Args TOption Source #
Methods args :: TOption -> [Either TOption String] Source #
(Args a, Args b) => Args [Either a b] Source #
Methods args :: [Either a b] -> [Either TOption String] Source #
Args [String] Source #
Methods args :: [String] -> [Either TOption String] Source #
(Args a, Args b) => Args (Either a b) Source #
Methods args :: Either a b -> [Either TOption String] Source #

type (|->) a b = a Source #

submit :: TArgs a => a |-> Action () Source #

gb :: Num a => a -> a Source #